Looking for a soft, moist, and protein-packed muffin that’s loaded with warm cinnamon flavor and perfect for breakfast or snacks? These Cinnamon Protein Muffins are exactly what you need. With their fluffy texture, bold spice notes, and satisfying protein punch, these low-carb muffins deliver all the comfort of classic baked goods—without refined sugar or gluten.
Perfect for meal prep , post-workout fuel , or when you’re craving something sweet but healthy, this easy-to-make recipe uses simple ingredients like protein powder, almond flour, and natural sweeteners to bring bold flavor into your keto or fitness-focused lifestyle. Whether you’re doing keto , following a low-carb diet , or simply love high-protein baked treats, these cinnamon protein muffins will quickly become a staple in your weekly rotation.
In this article, we’ll walk you through how to make these perfect cinnamon protein muffins from scratch , explore ingredient substitutions, offer serving ideas, and answer your most common questions. Let’s get started!
Why You’ll Love These Cinnamon Protein Muffins
These aren’t just any old energy bites—they’re a fluffy, spiced, melt-in-your-mouth delight made with real ingredients that bring bold flavor and satisfying texture together beautifully.
Here’s why they stand out:
- 🥣 High-protein base : Supports muscle growth and keeps you full longer.
- 🌕 Low-carb & keto-friendly options available : Made without wheat or sugar.
- 🍬 Naturally sweetened : Uses erythritol, monk fruit, or stevia-based sweetener.
- 🥧 Flavorful cinnamon finish : Brings warmth and depth without added sugar.
- ⏱️ Ready in under 30 minutes
- 🧁 Great for on-the-go snacks or breakfast
- 🧼 Easy cleanup : One bowl and a muffin tin = minimal mess!
Whether you’re making them for yourself after a workout, your kids for school, or guests at a dinner party, these cinnamon protein muffins will quickly become a go-to snack or breakfast item.
Ingredients You’ll Need
For the Muffins:
- 1 cup unflavored or vanilla whey protein powder (or plant-based protein)
- 1/4 cup almond flour
- 1/4 cup coconut flour
- 1 tsp baking powder
- 1 tsp ground cinnamon
- 1/2 tsp nutmeg (optional, for extra spice depth)
- 1/4 tsp salt
- 2 large eggs or flax eggs (for vegan option)
- 1/3 cup unsweetened applesauce or mashed banana (for moisture)
- 1/3 cup milk (dairy or plant-based)
- 1 tsp vanilla extract
- 1/3 cup powdered erythritol, monk fruit, or stevia blend
Optional: Chopped walnuts, pecans, or a sprinkle of cinnamon-sugar topping
Step-by-Step Instructions
Step 1: Preheat the Oven
Preheat your oven to 350°F (175°C) . Line a 12-cup muffin tin with parchment paper liners or lightly grease with oil or butter.
Tip: Silicone muffin molds work great for easier removal.
Step 2: Mix Dry Ingredients
In a mixing bowl, whisk together:
- Protein powder
- Almond flour
- Coconut flour
- Baking powder
- Cinnamon
- Nutmeg (if using)
- Salt
- Powdered sweetener
This dry mixture forms the base of your rich, protein-packed muffins.
Step 3: Add Wet Ingredients
To the dry ingredients, add:
- Eggs (or flax egg for vegan version)
- Applesauce or mashed banana
- Milk
- Vanilla extract
Stir until smooth and slightly thick—don’t overmix.
Pro Tip: If batter is too thick, add more milk one tablespoon at a time.
Step 4: Fill the Muffin Cups
Divide the batter evenly among the prepared muffin cups—fill each about ¾ full.
Optional: Sprinkle a bit of cinnamon or crushed nuts on top before baking.
Step 5: Bake Until Golden and Moist
Bake for 18–20 minutes , or until the edges are firm and the centers are set (a toothpick should come out mostly clean).
Let cool completely before removing from the tin.
Step 6: Serve and Enjoy!
Serve warm or chilled with a glass of unsweetened almond milk, black coffee, or tea.
Pair with Greek yogurt or a dollop of nut butter for extra richness.
Enjoy every soft, spiced bite of your Cinnamon Protein Muffins !
Nutritional Information (Per Muffin – Makes 12 Servings)
| Nutrient | Amount |
|---|---|
| Calories | ~120 kcal |
| Total Fat | ~5 g |
| Saturated Fat | ~1 g |
| Cholesterol | ~30 mg |
| Sodium | ~150 mg |
| Total Carbs | ~6 g |
| Dietary Fiber | ~2 g |
| Net Carbs | ~4 g |
| Protein | ~12 g |
Note: Values may vary based on brand and exact measurements.
Tips for the Best Cinnamon Protein Muffins
- Use quality protein powder – Whey isolate blends best, but plant-based works too.
- Don’t overmix the batter – Keeps the muffins light and prevents toughness.
- Add moisture as needed – Use applesauce, banana, or pumpkin puree for softness.
- Let cool before eating – Keeps muffins from being overly moist or sticky.
- Store properly after cooling – Wrap tightly or place in an airtight container to keep fresh longer.
Variations & Customizations
Want to switch things up? Try these tasty variations:
Chocolate Chip Protein Muffins
Fold in sugar-free chocolate chips for a brownie-style twist.
Banana Cinnamon Version
Add 1 mashed ripe banana for extra sweetness and moisture.
Pumpkin Spice Muffins
Replace applesauce with pumpkin puree and increase spices.
No-Bake Energy Bites
Chill the mixture in the freezer and roll into raw bites for grab-and-go snacks.
Vegan Option
Use plant-based protein powder, flax eggs, and coconut oil instead of butter.
Frequently Asked Questions (FAQ)
Are these truly keto-friendly?
Yes! With only ~4g net carbs per muffin , it fits perfectly within a ketogenic lifestyle.
Can I use oat flour instead of almond flour?
You can—but it increases the carb count and changes the texture. Use sparingly if going low-carb.
How do I store leftover muffins?
Store cooled muffins in an airtight container in the fridge for up to 5 days . Freeze for longer storage.
What kind of protein powder works best?
Whey isolate blends best and gives a smoother texture. Casein can be heavier. Plant-based options may require more liquid.
Can I make them in a loaf pan?
Yes! Pour into a greased 8×4-inch loaf pan and bake for 35–40 minutes .
Why This Recipe Works So Well
These Cinnamon Protein Muffins work because of their perfect balance of textures and bold flavors:
- The protein powder gives structure and body , while keeping calories low.
- The cinnamon adds warmth and aroma , enhancing overall flavor without sugar.
- And the applesauce or banana keeps everything moist and tender , mimicking traditional muffins.
It’s the kind of treat that makes eating clean feel indulgent—because it tastes so good.
Serving Suggestions
Looking for creative ways to serve your protein muffins beyond just a plate? Here are some ideas:
With Coffee or Tea
Pair with espresso, black coffee, or herbal tea for a cozy afternoon snack.
In Lunchboxes
Pack with veggies, meat, or cheese for a balanced keto lunch.
As Breakfast Bites
Toast and spread with almond butter or cream cheese for extra richness.
At a Party
Cut into mini bites and arrange on a platter with toothpicks for appetizer-style servings.
Layered in Jars
Crush one muffin and layer with Greek yogurt and berries in mason jars.
Health Benefits of Key Ingredients
Let’s take a quick look at the health benefits of what makes this dish special:
Whey Protein
Supports muscle repair, keeps you full longer, and helps control appetite.
Cinnamon
Natural anti-inflammatory that helps regulate blood sugar levels.
Almond Flour
Rich in vitamin E and magnesium—supports heart and brain function.
Even though these are muffins, they’re packed with nutrients that make them more than just a treat—it’s a smart addition to your balanced lifestyle when enjoyed mindfully.
Final Thoughts: A Must-Try Treat for Fitness Lovers
These Cinnamon Protein Muffins prove that healthy eating doesn’t have to be bland or boring. With their soft-chewy texture, rich spice notes, and protein-rich punch, they’re the kind of snack that turns a simple muffin into something magical.
Whether you’re new to protein baking, looking for a fast post-workout snack, or want to impress with homemade flair, these muffins deserve a spot in your kitchen. They’re easy to make, customizable, and loved by kids and adults alike.
So go ahead—whip up a batch, share them with friends, or savor them solo. Either way, you’re treating yourself to something truly special.
Print
Cinnamon Protein Muffins – High-Protein, Low-Carb & Perfectly Spiced!
- Total Time: 40 mins
Description
These muffins are a delightful blend of buttery sweetness and cinnamon!
Ingredients
1/4 cup (56.75 g) butter, softened, almost melted
1/4 cup (50 g) brown sugar replacement
1 tbsp allulose or xylitol
1 tbsp ground cinnamon
3/4 cup (157.5 g) cottage cheese
3 large eggs
1/3 cup (60.67 g) Swerve Sweetener (or other granular sweetener)
1 tsp vanilla extract
1 3/4 cup (196 g) almond flour
3/4 cup (81 g) unflavored whey protein powder
2 tsp baking powder 1/4 tsp salt
1/3 cup (41.67 g) Swerve Confectioners (optional drizzle)
1 tbsp heavy whipping cream (optional drizzle)
Water as needed (optional drizzle)
Instructions
Cinnamon Swirl
In a medium bowl, stir together the butter, sweeteners, and cinnamon. The butter should be almost melted but not quite, and the mixture should be like a thin paste. Set aside.
Muffins
Preheat the oven to 325ºF and line the wells of two muffin pans with silicone or parchment liners. If you only have one pan, you may need to work in batches.
In a blender, combine the cottage cheese, eggs, sweetener, and vanilla, and blend until smooth. Add the almond flour, whey protein, baking powder, and salt and blend again until smooth.
Fill each muffin cup about half full with the batter. Then add half a teaspoon of the cinnamon swirl into the center of each muffin and swirl lightly with a toothpick or the end of a small spoon. Take care not to push the cinnamon mixture toward the bottom of the muffin.
Divide the remaining batter overtop, then add more cinnamon swirl and swirl it in.
Bake 15 to 20 minutes, until the muffins are puffed and golden brown. The very top may not seem cooked through because of the buttery cinnamon mixture, but it will set when they cool.
Remove and let cool 20 minutes, then transfer to a wire rack to cool completely.
Optional Drizzle
In a small bowl, whisk together the sweetener and heavy whipping cream. Add water in tiny amounts until a drizzling consistency is achieved. Drizzle over the cooled muffins.
- Prep Time: 20 mins
- Cook Time: 20 mins
Nutrition
- Serving Size: 14 muffins
- Calories: 156
- Fat: 11.5g
- Carbohydrates: 2.7g
- Protein: 11g